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Home » Tools » TrAPSS


Product Description

The primary purposes served by TrAPSS (Transcript Annotation Prioritization and Screening System) are to: predict the potential of gene sub-sequences to contain disease-causing mutations; utilize annotation to prioritize focused regions of a gene during mutation screening; and aid scientists who are searching for the genetic mutation or mutations that are linked to expression of a disease phenotype.

Related Tools

Not applicable

Current Version

  • Current Version Number: 1.0
  • Release Date of Current Version: March 2006

Intended Audiences


Tool Download Files

Domain and Technical Information

  • Area of Focus: Genome Annotation
  • Primary Workspace: ICR
  • Currently caGrid Enabled?No
  • Compatibility Level: Silver (Learn more about compatibility levels)
  • Tool Maturity Assessment Stable Release (Adoption in Progress)
  • Architecture Level:  Web Application,
  • Installation Level: Intermediate - technical assistance may be required, download may require supporting infrastructure or software
  • System Requirements: 

    The TrAPSS system is composed of several Java applications, many web-based PHP tools, and a local MySQL database. A web server is needed to install TrAPSS. Apache is recommended. PHP is needed to run TrAPSS, as well as mod_php with Apache. The Java SDK 1.4+ is needed on the server to install TrAPSS. Also, the Java Runtime Environment including Webstart (jre 1.4+) is recommended for all of the clients that will be accessing the system.

User Support Resources

Application Support email

Documentation & Training

Access the caBIG® Learning Management System to learn about
training programs, register for classes, track your progress, and stay
informed about training offerings. We invite you to explore the
catalog to see what is available. You will need to create an account
before registering for classes.

Training Module

Presentations, & Demos


Developer Institution(s)

The University of Iowa