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The caBIG program has been retired, and while this website is being maintained temporarily to prevent broken links and provide access to information on the subset of caBIG projects that were transitioned into the new NCIP program, it will be archived in the near future. For information on the NCI's biomedical informatics program, please visit http://ncip.nci.nih.gov.

The information and links on this website are no longer being updated and are provided for reference purposes only.

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 Sort by:   Title  |   Area of Focus  |   Primary Workspace  |   Maturity Level  |   Compatibility Level  |   caGrid Enabled  |   Installation Level
  Definitions for headers Definitions for headers 76 results returned
 
Primary Workspace: caCORE
Maturity Level: Development Phase
Installation Level: Intermediate - technical assistance may be required, download may require supporting infrastructure or software
Area of Focus: Vocabularies
caGrid Enabled: Supporting Tool
Compatibility Level: Supporting Tool
Product Description: 

The BiomedGT Wiki enables groups of domain experts to collaboratively develop and maintain terminologies and is used in development of the NCI Thesaurus. The BiomedGT Wiki is a specific instance of LexWiki and operates on a Semantic MediaWiki platform.


 
Primary Workspace: caCORE
Maturity Level: Mature Product (Successfully Adopted)
Installation Level: Advanced - technical team required for installation
Area of Focus: Data Sharing
caGrid Enabled: Supporting Tool
Compatibility Level: Supporting Tool
Product Description: 

The CDE Browser the primary starting point for exploring the contents of the caDSR. This tool supports browsing, searching, and exporting CDEs within or across caDSR Contexts. You do not need an account to use the CDE Browser.


 
Primary Workspace: caCORE
Maturity Level: Mature Product (Successfully Adopted)
Installation Level: Advanced - technical team required for installation
Area of Focus: Data Sharing
caGrid Enabled: Supporting Tool
Compatibility Level: Supporting Tool
Product Description: 

The CDE Curation Tool supports creation and editing of Data Element Concepts, Value Domains, and Data Elements and is intended for use by Context Adminisrators to annotate administered items with controlled terminology concepts and for help in naming and defining content. The tool helps to ensure ISO/IEC 11179 compliance and also use of caDSR naming and versioning conventions.

An account is required to create and edit, and you must have curatorial authority for your Context. No login is required to query CDEs and their components. Searching for CDEs using a concept is now supported.


 
Primary Workspace: caCORE
Maturity Level: Mature Product (Successfully Adopted)
Installation Level: Advanced - technical team required for installation
Area of Focus: Infrastructure
caGrid Enabled: Supporting Tool
Compatibility Level: Supporting Tool
Product Description: 

Common Logging Module (CLM) is a set of tools that provides a flexible and comprehensive solution for auditing and logging. The components include Event Logging, Automated Object State Logging, Asynchronous Logging to database, Query Interface, and Web-based Log Locator Tool.


 
Primary Workspace: caCORE
Maturity Level: Mature Product (Successfully Adopted)
Installation Level: Advanced - technical team required for installation
Area of Focus: Infrastructure
caGrid Enabled: Supporting Tool
Compatibility Level: Supporting Tool
Product Description: 

The CBIIT Common Security Module (CSM) provides a comprehensive solution to common security objectives, with flexible delivery of security tools to allow application developers to integrate security with minimal coding effort. This helps eliminate the need for development teams to create their own security methodology. CSM provides solutions for authentication, authorization, and user provisioning.


 
Primary Workspace: caCORE
Maturity Level: Mature Product (Successfully Adopted)
Installation Level: Advanced - technical team required for installation
Area of Focus: Data Sharing
caGrid Enabled: Supporting Tool
Compatibility Level: Supporting Tool
Product Description: 

Form Builder (login required) allows users leverage CDE metadata to create Forms that replicate the content of Case Report Forms. These Forms can include complex behavior, such as repeating groups and skip patterns. A form in caDSR is a description of a printed or electronic document. It cannot be used to collect data. An account is required to use this tool.


 
Primary Workspace: caCORE
Maturity Level: Mature Product (Successfully Adopted)
Installation Level: Basic - Wizard or web browser application; minimal technical assistance required
Area of Focus: Vocabularies
caGrid Enabled: Supporting Tool
Compatibility Level: Supporting Tool
Product Description: 

The NCI Metathesaurus (NCIm) Browser is a web-based terminology browser that allows users to browse and search the NCI Metathesaurus. It provides user-friendly access to 76 biomedical terminologies, cross-mapped using NCIm concepts to describe shared meanings. It is a rich resource for reference, coding and translation, encompassing 1,400,000 concepts and 20,000,000 relationships.


 
Primary Workspace: caCORE
Maturity Level: Mature Product (Successfully Adopted)
Installation Level: Intermediate - technical assistance may be required, download may require supporting infrastructure or software
Area of Focus: Vocabularies
caGrid Enabled: Supporting Tool
Compatibility Level: Supporting Tool
Product Description: 

Protégé is a free, open source ontology editor and knowledge-base framework. The Protégé-OWL plug-in extends Protégé to support the Web Ontology Language (OWL). Visit the Protégé wiki page for more information.

NCI Protégé is a collection of Protégé plug-ins used to edit the NCI Thesaurus. NCI Protégé provides a customized OWL editing environment, including additional editing and querying capabilities that are not available in the Protégé OWL Plugin. The NCI-specific plug-ins have been implemented as a tabbed interface. Beginning with NCI Protégé 1.3.0. this tool allows imports of ontologies in database mode and enables collaborators to begin "federating" ontologies.

NCI Protégé runs in a client-server environment. Current editors will want to download the client only. Others may wish to download for review or download and install the entire client-server package. Links to both are provided in the tool downloads.


 
Primary Workspace: caCORE
Maturity Level: Mature Product (Successfully Adopted)
Installation Level: Basic - Wizard or web browser application; minimal technical assistance required
Area of Focus: Vocabularies
caGrid Enabled: Supporting Tool
Compatibility Level: Supporting Tool
Product Description: 

The NCIt Browser is a web-based terminology browser that allows users to browse and search the NCI Thesaurus (NCIt), including content from other sources included in or linked to from NCIt. The terminology information published through the NCIt Browser is retrieved via LexEVS.


 
Primary Workspace: caCORE
Maturity Level: Stable Release (Adoption in Progress)
Installation Level: Advanced - technical team required for installation
Area of Focus: Data Sharing
caGrid Enabled: Supporting Tool
Compatibility Level: Supporting Tool
Product Description: 

The Object Cart application provides shopping cart-type operations for caDSR data objects. Items in the Object Cart can be searched and viewed in HTML or XML using the Object Cart Browser.


 
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